PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g19630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 33068.1 Da    PI: 4.8807
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g19630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.9e-27958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  Tp1g19630  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 58
               79******************************************998776 PP
2K-box20.52e-08121192980
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                + +++ e+l+qe+ +L++++++ ++e+R++  + +   s+++ +  e+qL + l+++ +++++ll ++++  
  Tp1g19630 121 AINSDVEELEQEVCRLQQQLQMAEEELRRYEPDPVRFTSMEDYEVCEKQLLDTLTHVVQRREHLLSNHLSSY 192
                5567899***********************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002659.65E-34275No hitNo description
SuperFamilySSF554558.11E-29280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPNQEREN ALFFPDQARR PDIQSKEYLL RILQQLKSEN DIALQLTNPT  120
AINSDVEELE QEVCRLQQQL QMAEEELRRY EPDPVRFTSM EDYEVCEKQL LDTLTHVVQR  180
REHLLSNHLS SYETSTMQQS IAGPFVNGVV EGWLSENGPN QAHLFDASAH SNQLRELSSA  240
MYEPLLQGSS SSSNQNNMSE CHVANHNGEM FPEWAQAYSF ASMNQVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-18190191MEF2 CHIMERA
6bz1_B5e-18190191MEF2 CHIMERA
6bz1_C5e-18190191MEF2 CHIMERA
6bz1_D5e-18190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g19630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008876.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A087HQB90.0A0A087HQB9_ARAAL; Uncharacterized protein
STRINGA0A087HQB90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-172AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]