PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557822.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 29919.2 Da    PI: 8.7286
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.3e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien  nrqvtfskRr+g+lKKA+EL vLCdaevavi+fs++gkl+e++s
  XP_010557822.1  9 KRIENANNRQVTFSKRRAGLLKKAHELAVLCDAEVAVIVFSNSGKLFEFAS 59
                    79***********************************************86 PP
2K-box80.54e-278217111100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     e kae  + e++ Lk+ei++L+++q +llG++L+ Lslk+Lq+Le+qL+++  ++R +K++ll+eq+ee++ ke+++  en++Lr+++ee
  XP_010557822.1  82 ECKAEDGSAEVDHLKDEISTLREKQSQLLGKGLNGLSLKDLQRLEEQLNDAFLSVRGRKEQLLMEQVEESRLKEQRAVLENETLRRQVEE 171
                     556788899******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-43160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-33272IPR002100Transcription factor, MADS-box
CDDcd002652.64E-44274No hitNo description
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.88785175IPR002487Transcription factor, K-box
PfamPF014862.3E-1987169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRQVT FSKRRAGLLK KAHELAVLCD AEVAVIVFSN SGKLFEFASS  60
GMKKILSRYD KSQNPLDPPL IECKAEDGSA EVDHLKDEIS TLREKQSQLL GKGLNGLSLK  120
DLQRLEEQLN DAFLSVRGRK EQLLMEQVEE SRLKEQRAVL ENETLRRQVE ELQGILPSAN  180
HHYMPSSYIE CRHPIEIKNS QIKHTGLDGF DCMALKADSD TTLQLGLPGE AEERKRKEPK  240
RGSPSPSGGS MAKSTARTCI QRISLVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-25175175MEF2 CHIMERA
6byy_B7e-25175175MEF2 CHIMERA
6byy_C7e-25175175MEF2 CHIMERA
6byy_D7e-25175175MEF2 CHIMERA
6bz1_A8e-25175175MEF2 CHIMERA
6bz1_B8e-25175175MEF2 CHIMERA
6bz1_C8e-25175175MEF2 CHIMERA
6bz1_D8e-25175175MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557822.10.0PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ392956e-99AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3CW261e-105A0A1J3CW26_NOCCA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3H8J41e-105A0A1J3H8J4_NOCCA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1J3INI31e-105A0A1J3INI3_NOCCA; Agamous-like MADS-box protein AGL15
STRINGXP_010557822.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-81AGAMOUS-like 15