PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521742.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 728aa    MW: 80660.2 Da    PI: 6.9668
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-095445762254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ ++++ LA+++gL+ +qV++WF N R +
  XP_010521742.1 544 HPYPTDNDKQMLATQTGLSRNQVSNWFINARVR 576
                     89*****************************87 PP
2BELL90.81.4e-29399467472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e + kkakL  l+eeV++rYk y++q+q+v+ssFe vagl +a+pY+slAl +iS++F++L+ ai++q+
  XP_010521742.1 399 ETRLKKAKLSLLQEEVCRRYKLYNQQMQMVVSSFESVAGLSTATPYISLALGRISKSFQSLRIAITDQL 467
                     7789**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-44330465IPR006563POX domain
PfamPF075262.3E-32335464IPR006563POX domain
PROSITE profilePS5007112.115517580IPR001356Homeobox domain
CDDcd000869.36E-12520581No hitNo description
SMARTSM003899.9E-10520584IPR001356Homeobox domain
SuperFamilySSF466896.27E-17522588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-28523586IPR009057Homeodomain-like
PfamPF059201.7E-18537576IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDTMNCRPEL HVAQRSRRDK LRSHQLNDWE NPNHQRHHQH QIELMINPDL VKNASGPPGL  60
IGFLPNQIAV PVQTDSVHTY QDCAAMFMNM PQAMMIPSST IHRDGIHHDP HQGCSDSSQL  120
CCTVVMNHGD DISNNLNVRY DVLDRPLRCP KQTYDAGQDV VDRSSLSSSE ISSQVDDKKY  180
HLNPLYQNYY QNSVVTLAGL GPMQDDNRES VYEHCSWPGN SQGELVFLPS NGNQQPDSWL  240
SRPVGSNVNQ WTDGSGSIVS RKHDQEPRNV TTASVKKGLS LFLEQEVPIP SMISRRSSGK  300
SLADVAFEGG VSASSLVNVQ RDVGPLGPFT GYATILKSSR FLKPAQQLLD EFCNGYVAWI  360
TSRSESNFMD AANSCNEGGT IRSCNGVEGF SSSDPIKPET RLKKAKLSLL QEEVCRRYKL  420
YNQQMQMVVS SFESVAGLST ATPYISLALG RISKSFQSLR IAITDQLMHI SGNGYGTTNQ  480
TSYNTKFTSP SNDIMDGAKK QRSTMCNNGV SLEPQSQNVW RPQRGLPERA VSVLRAWLFD  540
HFLHPYPTDN DKQMLATQTG LSRNQVSNWF INARVRVWKP MVEEMHMLEM KAMVAAAAAD  600
TDDQTLKTSD MTSNVGHSNG PCNNNFGQNG TTSEQAVELR GNSNVDGVVE KRSRVDHMRC  660
NVDLSGGLMG FVPYGHQRGG FDRGPGNVSL TLGLMHGADS VPQTQTQTQT QTHQNEFGVG  720
RMVHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-16526584563Homeobox protein Meis2
3k2a_B9e-16526584563Homeobox protein Meis2
4xrs_A6e-16526583158Homeobox protein Meis1
4xrs_B6e-16526583158Homeobox protein Meis1
5bng_A7e-16526584159Homeobox protein Meis2
5bng_B7e-16526584159Homeobox protein Meis2
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521742.10.0PREDICTED: BEL1-like homeodomain protein 8
STRINGXP_010521742.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-139BEL1-like homeodomain 8