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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040576t1 | ||||||||
Common Name | TCM_040576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | AP2 | ||||||||
Protein Properties | Length: 542aa MW: 59658.4 Da PI: 6.5136 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 167 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Thecc1EG040576t1 167 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 223 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 5.9e-15 | 268 | 317 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Thecc1EG040576t1 268 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 317 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.0E-9 | 167 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.28E-20 | 167 | 233 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-15 | 167 | 233 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-23 | 168 | 237 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-12 | 168 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 168 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 169 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-24 | 266 | 327 | No hit | No description |
SuperFamily | SSF54171 | 5.23E-18 | 266 | 327 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-33 | 267 | 331 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-18 | 267 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 267 | 325 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-9 | 268 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 307 | 327 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MGSMNSNNWL SFPLSPTNSS LPTHLHPSQS HQFNLGLVND NVENPFQAQE WNLINTHDTS 60 EVPKVADFLG VSKSESPSLD LVAFNEIHQA NDSDYSFQSN SIVPVQNAVV AANNNYEYQE 120 NANNLQSLTL SMGSGKGSTC ETSGENSTNT VEAPPRRTLD TFGQRTSIYR GVTRHRWTGR 180 YEAHLWDNSC RREGQSRKGR QGGYDKEEKA ARAYDLAALK YWGTSTTTNF PISNYEKELE 240 EMKHMTRQEF VAAIRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST 300 EEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKAILESNTL PIGGGAAKRL KEAQALESSR 360 KREEMIALGS SFQYGSSTSS RLQAYPLMQT PFEQPQPLLT LQNQDMSQYA QDTSSFHQNY 420 IQTQLQLHQQ SGSYLHQPSQ NSQFYNSHIQ NNPALLHGLM SMGCSSTVVD NNGSSSGSYS 480 GGYLGNGIGM ASNSTAGNAV GSTEELALVK VDYDMPSGGY GGWSGDSVQG TNAGVFSMWN 540 D* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982598.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A061GZ62 | 0.0 | A0A061GZ62_THECC; AP2 domain-containing transcription factor | ||||
STRING | EOY32584 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3015 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040576t1 |
Entrez Gene | 18589779 |