PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034970t1
Common NameTCM_034970
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 38476.2 Da    PI: 5.1072
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034970t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-28958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Thecc1EG034970t1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                      79********************************************9997 PP
2K-box21.87.9e-091392051278
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                       ++ e  q+e+ +L++++++ ++++R +  + L   s+ eL++ e++L + l +i ++K+ ll ++++
  Thecc1EG034970t1 139 SDFEGIQEEIVRLQQQLQMAEEQLRAYEPDLLRLTSMGELESCEKHLVDTLANIVQRKEYLLSNHLS 205
                       566789********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
CDDcd002652.16E-35270No hitNo description
SuperFamilySSF554551.16E-29281IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-5142206IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVFTRY IDLPDQEREH ALIFPDQIRH PDIQNKEYLL RILQQLRSEN DIALQLAKKV  120
FVSFFNGFVP QNSPASFSSD FEGIQEEIVR LQQQLQMAEE QLRAYEPDLL RLTSMGELES  180
CEKHLVDTLA NIVQRKEYLL SNHLSSYHPS PIQQGLPPSF DNEVVNWLPD GGQNQSQIFD  240
SSSSLNQLRD LSSTVYDPLL QGSISNPSGE DFQPWPQPFV STPTLYSHLQ HGMVGPEMTE  300
MMANEQMEIP GNNSSHGQAA ENGGSNYENR VRQLNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-16184185MEF2 CHIMERA
6bz1_B2e-16184185MEF2 CHIMERA
6bz1_C2e-16184185MEF2 CHIMERA
6bz1_D2e-16184185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165293e-37JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981120.10.0PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-127AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A061FHA40.0A0A061FHA4_THECC; AGAMOUS-like 104, putative
STRINGEOY160920.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-118AGAMOUS-like 104
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]