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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034148t1 | ||||||||
Common Name | TCM_034148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26051.7 Da PI: 9.4319 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.8 | 5.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien +nrqvt+skRrng++KKA+EL vLCda++++i+fsstgkl+e++s Thecc1EG034148t1 9 KLIENATNRQVTYSKRRNGLFKKANELTVLCDARASIIMFSSTGKLHEFIS 59 569**********************************************86 PP | |||||||
2 | K-box | 99 | 6.8e-33 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yqk g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++ s+++Lq Leq++e+s+k iR++K++++ +qi++++kk ++++e++++ Thecc1EG034148t1 71 YQKVLGVDLWTTHYEKMQEQLKKLKEVNRNLRKEIRQRMGDCLNDVSFEDLQALEQEMETSVKLIRDRKYRVISNQIDTSRKKVRNVEEIHRN 163 78888999************************************************************************************* PP K-box 94 Lrkkle 99 L ++l+ Thecc1EG034148t1 164 LLHELD 169 *99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.88 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.09E-38 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 7.6E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-22 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.551 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARGKIQIKL IENATNRQVT YSKRRNGLFK KANELTVLCD ARASIIMFSS TGKLHEFISP 60 STSTKQIYDQ YQKVLGVDLW TTHYEKMQEQ LKKLKEVNRN LRKEIRQRMG DCLNDVSFED 120 LQALEQEMET SVKLIRDRKY RVISNQIDTS RKKVRNVEEI HRNLLHELDA IKEDPYGLVD 180 NGVDYDTIIG YQNGGPRIFA LRLQPNHPNL HSGGGSDLTT YPLLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021283648.1 | 1e-164 | floral homeotic protein PMADS 1 | ||||
Swissprot | P23706 | 1e-122 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A061FCW9 | 1e-166 | A0A061FCW9_THECC; Floral homeotic protein DEFICIENS isoform 1 | ||||
STRING | EOY14906 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5261 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-93 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034148t1 |
Entrez Gene | 18591481 |