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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG018981t1 | ||||||||
Common Name | TCM_018981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28366.1 Da PI: 8.8834 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.5e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+ Thecc1EG018981t1 10 QIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59 69**********************************************96 PP | |||||||
2 | K-box | 96.3 | 4.7e-32 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ + +++ e kL + ie Lqr++Rh+lGe+L++Lsl++Lq Leqq+++slk+iR++Kn+l++e+i+elqk+e++lq++n++L kkl+e Thecc1EG018981t1 82 PTGSESQGNWSLECPKLMSTIEALQRNLRHFLGEELDPLSLRDLQLLEQQIDTSLKRIRTRKNQLMHESISELQKRERALQNQNNMLAKKLKE 174 46677889**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.11E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-27 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.221 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGRVQLRQ IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD 60 SSMERILDRY EQQSNAERQL VPTGSESQGN WSLECPKLMS TIEALQRNLR HFLGEELDPL 120 SLRDLQLLEQ QIDTSLKRIR TRKNQLMHES ISELQKRERA LQNQNNMLAK KLKENEKTQT 180 EHAQCEQQNL SQNSSSFIQP PPATIEFPSL TIGGSFQAIE GANKEAETQP QPSTNTVIPP 240 WMLSHVNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-19 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155656 | 4e-82 | KC155656.1 Gossypium hirsutum MADS box protein MADS61 mRNA, complete cds. | |||
GenBank | KC155664 | 4e-82 | KC155664.1 UNVERIFIED: Gossypium hirsutum MADS box protein MADS69-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974314.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Swissprot | D7SMN6 | 1e-108 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A061EHA9 | 0.0 | A0A061EHA9_THECC; Agamous-like MADS-box protein AGL8 isoform 1 | ||||
STRING | EOY03792 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-78 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG018981t1 |
Entrez Gene | 18601756 |
Publications ? help Back to Top | |||
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