PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004052t1
Common NameTCM_004052
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 236aa    MW: 26697.8 Da    PI: 5.4404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004052t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17103151253
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                        y+GVr ++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+++ 
  Thecc1EG004052t1 103 SYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAALST 151
                       69*******.**********422...25**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-17102162No hitNo description
SMARTSM003803.6E-34103167IPR001471AP2/ERF domain
PfamPF008471.9E-11103150IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21103163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-29103162IPR001471AP2/ERF domain
PROSITE profilePS5103222.669103161IPR001471AP2/ERF domain
PRINTSPR003674.4E-10104115IPR001471AP2/ERF domain
PRINTSPR003674.4E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MISVSLQDMD SSFLESLNSE FQLEYGQDLL ESFSPNNELF LDQDFLSFDI IDSKELPPQD  60
TTLYHHGSRE SSISSCGLII DEEHVVSSAK KREEQQQPKG EKSYRGVRKR PWGKYAAEIR  120
DSTRHGIRVW LGTFDSAEAA ALAYDQAALS TQGPKAVLNF PVERVRESLR NMNYYCKDGA  180
SPAVELKQRN YVQRKSMARK NKKKQSQAKN VVVLEDLGSE YLEELLSSSQ ITSSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-261041631574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975963.11e-165PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y99e-56ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A061DWS91e-173A0A061DWS9_THECC; Ethylene response factor 1, putative
STRINGEOX944681e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2243145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-35ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]