PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000266t1
Common NameTCM_000266
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27310.2 Da    PI: 10.0595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000266t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.3e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fss+gk++e++s
  Thecc1EG000266t1  9 KKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFIS 59
                      68***********************************************86 PP
2K-box74.23.7e-2571179198
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLq...........reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                       yqk+ g +l+++++e++q+++++Lk+ ++ L+              R+++GedL++L++keLq Le ++ +sl+ +R++K++++++q+++ +k
  Thecc1EG000266t1  71 YQKTLGIDLWSSHYEKMQENYRRLKEINNRLRreiskvdqgmyAFSRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKK 163
                       78899999************************555444444443359********************************************** PP

             K-box  83 kekelqeenkaLrkkl 98 
                       k ++l++++ +L   l
  Thecc1EG000266t1 164 KVRNLEQRHANLVLDL 179
                       **********997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.632161IPR002100Transcription factor, MADS-box
CDDcd002653.19E-38280No hitNo description
SuperFamilySSF554552.09E-36295IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-1682176IPR002487Transcription factor, K-box
PROSITE profilePS5129714.01684185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIEIKK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS SGKFHEFISP  60
NISTKTFFDL YQKTLGIDLW SSHYEKMQEN YRRLKEINNR LRREISKVDQ GMYAFSRQRI  120
GEDLDDLNIK ELQALEAKMA SSLEAVRQRK YHVIKTQTDT YKKKVRNLEQ RHANLVLDLE  180
AKLEDGIVEN EAYYESSMGL ANGASNLYAL RLHQNHQVNL LHHGGRFGPN DLRLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-15162162MEF2 CHIMERA
6byy_B6e-15162162MEF2 CHIMERA
6byy_C6e-15162162MEF2 CHIMERA
6byy_D6e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1875781e-108HM187578.1 Gossypium hirsutum MADS protein (MADS9) mRNA, complete cds.
GenBankKC1556471e-108KC155647.1 Gossypium hirsutum MADS box protein MADS52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046775.11e-163PREDICTED: floral homeotic protein PMADS 1 isoform X1
SwissprotQ003J21e-115TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A061DGS81e-174A0A061DGS8_THECC; K-box region and MADS-box transcription factor family protein, putative isoform 1
STRINGEOX909311e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]