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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400017770 | ||||||||
Common Name | LOC102582906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 239aa MW: 26994.4 Da PI: 9.8953 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.5 | 1.4e-39 | 61 | 187 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgka 90 ++kkdrhski T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s+++ ++ ss +++ ++++ PGSC0003DMP400017770 61 PVKKDRHSKILTSQGHRDRRVRLSLGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKS-ILDTPSSINNN----NNSE 144 68**************************************************************44444.33323333333....3466 PP TCP 91 aksaa.kskksqksaasalnlakesrakarararertrekmri 132 + +++ + + ++ +++ + ++srakarararert +k + PGSC0003DMP400017770 145 CDEDMiVPLAAVDELTKKAKQERDSRAKARARARERTIKKIWT 187 67777566666666666667777**************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-36 | 62 | 146 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.683 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.497 | 167 | 184 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MFPFGNSSNG NPILHSSFLS NQILLHQHDL PTHHHYLGAP NGHLIDSYAT NNLVINKSKK 60 PVKKDRHSKI LTSQGHRDRR VRLSLGVARK FFDLQDMLGY DKPSKTLDWL FTKSKLAIED 120 LINDVSKKSI LDTPSSINNN NNSECDEDMI VPLAAVDELT KKAKQERDSR AKARARARER 180 TIKKIWTQIA PNREATASHY NNWNHDNVNP TIMDASTICC TSSLQVQKAW DSYHGSQI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400017770 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ496325 | 0.0 | GQ496325.1 Solanum lycopersicum TCP transcription factor 7 (TCP7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338278.1 | 1e-178 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | M1AMI9 | 1e-177 | M1AMI9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026037 | 1e-178 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400017770 |
Entrez Gene | 102582906 |
Publications ? help Back to Top | |||
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