![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0404s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 255aa MW: 28559.5 Da PI: 6.3948 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176 | 3.7e-55 | 79 | 183 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie +tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++ SapurV1A.0404s0270.1.p 79 QLQMFWTNQmleIELTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIS 165 89*******888899************************************************************************ PP NF-YC 85 rtdifdflvdivprdelk 102 rtd+fdflvdi+prdelk SapurV1A.0404s0270.1.p 166 RTDVFDFLVDIMPRDELK 183 ***************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-33 | 61 | 173 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.5E-37 | 95 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-21 | 101 | 164 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MNQSEQTQQQ QQTLMGVAAS AAQMAYASTP YQTAPMVASG TPTISIPSQT QPPATFSNSP 60 HQLPYQQAQH FHHLQQQQQL QMFWTNQMLE IELTTDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVIFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIMPRD 180 ELKEEGLGVT KSTIPVGSPA DLPYYYVPQH PVGPPGMIMG NPVDQAATYG AQQPRPPLSF 240 MPWPQTQPQQ QKNT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-57 | 87 | 179 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 151 | 157 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0404s0270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216770 | 0.0 | AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022075.1 | 1e-145 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_011022077.1 | 1e-145 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 2e-79 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2K2AE68 | 1e-144 | A0A2K2AE68_POPTR; NF-YC family protein | ||||
STRING | POPTR_0005s09770.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-80 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0404s0270.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|