PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 85923
Common NameLEAFY, SELMODRAFT_417910
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family LFY
Protein Properties Length: 117aa    MW: 13943.1 Da    PI: 10.0037
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
85923genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY255.13e-781115271385
  FLO_LFY 271 kerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPt 372
              kerGekcPtkvtnqvfr+ak+ gasyinkPkmrhYvhCYalhcLd e+sn+lr+ fk+rgenvGawrqacy+plv++a++ +wdi++vf+++++L+iWYvPt
    85923   1 KERGEKCPTKVTNQVFRHAKHRGASYINKPKMRHYVHCYALHCLDLEQSNHLRKVFKDRGENVGAWRQACYYPLVEMARNLNWDIEGVFSRNDKLRIWYVPT 102
              89**************************************************************************************************** PP

  FLO_LFY 373 kLrqLChlerska 385
              +LrqLChle+sk+
    85923 103 RLRQLCHLEKSKE 115
              **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.2E-651114IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
KERGEKCPTK VTNQVFRHAK HRGASYINKP KMRHYVHCYA LHCLDLEQSN HLRKVFKDRG  60
ENVGAWRQAC YYPLVEMARN LNWDIEGVFS RNDKLRIWYV PTRLRQLCHL EKSKEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A2e-62111456169FLORICAULA/LEAFY HOMOLOG 1
4bhk_B2e-62111456169FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966714.26e-83floricaula/leafy-like protein FL1
RefseqXP_002978027.16e-83floricaula/leafy-like protein FL1
SwissprotO044071e-71NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLD8R4X43e-82D8R4X4_SELML; Uncharacterized protein (Fragment)
TrEMBLD8S4201e-81D8S420_SELML; Uncharacterized protein LEAFY
STRINGEFJ206842e-82(Selaginella moellendorffii)
STRINGEFJ327415e-83(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70181619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-62floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]