PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06272.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 339aa    MW: 36068.3 Da    PI: 5.0803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06272.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.38.1e-3681174395
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + ++  
  Sme2.5_06272.1_g00002.1  81 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsINGTLKIPTTSPAT 166
                              5699***********************************************************77777444311111111111111 PP

                      TCP  88 gkaaksaa 95 
                              +k+ +s++
  Sme2.5_06272.1_g00002.1 167 NKEGESSM 174
                              11111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2985171IPR005333Transcription factor, TCP
PROSITE profilePS5136926.31286140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASAENNQNI EQEDDDVNDS KIDPLLGDSQ EYTIAAVGNV EGVDPAPPPS TDMVPVLKEE  60
PADNDLRVGL NMQLQKVEKQ PVKRSSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK  120
SEGETIRWLL ERAEPAIIAA TGTGTVPAIA VSINGTLKIP TTSPATNKEG ESSMKKRKRA  180
ANSEFYDSSN FAPVAPVAPQ GLVPVWPVPT TAFTGGTTFY MLPPGTNPTV ASTGPQLWAT  240
PIFNVPGRPI SNFSGIGYGV SSSEFQLSSS CVSKSDGNGD KLGAVVSAMA PSSSSIGSTT  300
TSTTQMLRDF SLEIYDKREL QFMVGSGSSE NDQTSSSKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358001e-143AC235800.1 Solanum lycopersicum chromosome 3 clone C03HBa0137K15, complete sequence.
GenBankGQ4963391e-143GQ496339.1 Solanum lycopersicum TCP transcription factor 21 (TCP21) mRNA, complete cds.
GenBankHG9755151e-143HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362699.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT891e-65TCP19_ARATH; Transcription factor TCP19
TrEMBLM1C8W50.0M1C8W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000623270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.23e-66TCP family protein