PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01375.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 700aa    MW: 76681.5 Da    PI: 7.3154
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01375.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-095035352254
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              ++yp+ +++  LA+++gLt +qV++WF N R +
  Sme2.5_01375.1_g00007.1 503 HPYPTDSDKHMLASQTGLTRNQVSNWFINARVR 535
                              89*****************************87 PP
2BELL100.81e-32356421772
                     BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +kkakL+ +++e++krY+qy++q+q+v+ssFe+vagl +a+pY+slAlk++++hF++L++ai++++
  Sme2.5_01375.1_g00007.1 356 QKKAKLMIMQDEICKRYRQYHQQMQMVVSSFETVAGLSAATPYISLALKTVTQHFKSLRNAITDHL 421
                              79************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-43272419IPR006563POX domain
PfamPF075267.2E-39277418IPR006563POX domain
PROSITE profilePS5007111.904476539IPR001356Homeobox domain
CDDcd000862.21E-11479540No hitNo description
SMARTSM003892.9E-9479543IPR001356Homeobox domain
SuperFamilySSF466896.84E-17481545IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28482543IPR009057Homeodomain-like
PfamPF059206.6E-18496535IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MSDQTSEFHV AQQSRREKLR VVNSEEIDIV HNPYQYRGTS YDPSVVLSSS EVINFTTTTS  60
TDVITQSCNM WRSRGGLQHL GCGWSNISDY NSTGSVVLEN NSNLSTMFVV GGGVRGGGGA  120
LSESLNLNDN NIDVKPSFFG GYNTEMQQSQ CGTAANLSSV LYHDTLQGVV TSATAAGNQG  180
VERRGVGSLW SNDNESGFLM IPNYMDQSRH CELGSNSRTN VVSDNSSAQG LDLSLSPVPQ  240
SRTNTMQVEK RNNAVVPENF PHRNAVPLGP FTGYATILKS SKFLRPAQQL LDELCDLAAG  300
SSNVIKCSNF SKKIRDGFRV SCDVNVAAES SSGGCGGGGG DSGGLNESNV RPDYLQKKAK  360
LMIMQDEICK RYRQYHQQMQ MVVSSFETVA GLSAATPYIS LALKTVTQHF KSLRNAITDH  420
LKHIRQALGE DLPSPAFGMS NKGYGNSSRL RSVDQTTLDN QKSGGGAGVA FFESQQHVWR  480
PQRGLPERAV AILRAWLFDH FLHPYPTDSD KHMLASQTGL TRNQVSNWFI NARVRVWKPM  540
VEEIHMLETK GGGDQTGSSI SKSDGNKLVA ERTNQVSCSQ HLNTVLLNMS SVVMPEKQGI  600
VGPSERLDDS SSTDHTWRNQ EKRSRIECHS IPTASSIDGS LMGFVPYQRN ALEIGGNICP  660
VSLTLGLRQN AEAAQQQQLQ MHEHRLRQQF GGQIIHDFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17485542158Homeobox protein Meis1
4xrs_B9e-17485542158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3563201e-142AY356320.1 Solanum tuberosum putative ribosomal protein and L382 genes, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340165.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLM1AE490.0M1AE49_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000208250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-85BEL1-like homeodomain 8