PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676786474

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 353aa MW: 40028.2 Da PI: 4.8046

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676786474	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	5.8e-40	86	234	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.........eaesssssasnsssg 88 a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++ s ++ e+e++ ++ + 676786474 86 AVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnS----NDDdfgniggevEEEEEDDDDDD---D 178 89**************************************************************65542....22222334432222222222222...1 PP TCP 89 ..............kaaksaa.kskksqksaasalnlak.esrakarararertrek 129 ++ + k +k +k+ + +n++ sraka+ +a+e tre 676786474 179 geksfvygsspkscEEVVCEVeKAEKGEKKIE-LSNISSkGSRAKASGKAKEITREM 234 34477888888555333333312233333333.344443488899999999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-39	87	234	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.743	88	146	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MSSSNNDYNN NGNNGVYPLS LYLASLSGHH DIIRNPYINH QSTEAPGQMV SAMPESLVNY 60 MSFNSNSAVN QQGFEIPEVS REIKKAVKKD RHSKIHTAQG LRDRRVRLSI GIARQFFDLQ 120 DMLGFDKASK TLDWLLKKSR RAIKELVQEK KLNSNDDDFG NIGGEVEEEE EDDDDDDDGE 180 KSFVYGSSPK SCEEVVCEVE KAEKGEKKIE LSNISSKGSR AKASGKAKEI TREMTYDHPE 240 SISEITQTEI MDPFKRSIII NEGEDMTRSF YKEATQEFNN QECILTKTKV NLPTNTDLSY 300 NQHYGTFMLK DHGSSNNYNT ILPQNLDFDY DQNPFIDQPF CAVTNTSFSR GFP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MSSSNNDYNN NGNNGVYPLS LYLASLSGHH DIIRNPYINH QSTEAPGQMV SAMPESLVNY  60
MSFNSNSAVN QQGFEIPEVS REIKKAVKKD RHSKIHTAQG LRDRRVRLSI GIARQFFDLQ  120
DMLGFDKASK TLDWLLKKSR RAIKELVQEK KLNSNDDDFG NIGGEVEEEE EDDDDDDDGE  180
KSFVYGSSPK SCEEVVCEVE KAEKGEKKIE LSNISSKGSR AKASGKAKEI TREMTYDHPE  240
SISEITQTEI MDPFKRSIII NEGEDMTRSF YKEATQEFNN QECILTKTKV NLPTNTDLSY  300
NQHYGTFMLK DHGSSNNYNT ILPQNLDFDY DQNPFIDQPF CAVTNTSFSR GFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-14	93	146	1	54	Putative transcription factor PCF6
5zkt_B	1e-14	93	146	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676786474

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127539.1	0.0	PREDICTED: transcription factor TCP1-like
Swissprot	Q9FYG7	1e-155	TCP1_ARATH; Transcription factor TCP1
TrEMBL	M4EYW8	0.0	M4EYW8_BRARP; Uncharacterized protein
STRING	Bra034010.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-132	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]