PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676753858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 379aa MW: 42634.7 Da PI: 5.6414 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84 | 9e-27 | 107 | 156 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l +s 676753858 107 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSDRLSLFS 156 79******************************************998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.973 | 99 | 159 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-36 | 99 | 158 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-28 | 100 | 177 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.45E-33 | 100 | 173 | No hit | No description |
PRINTS | PR00404 | 1.3E-24 | 101 | 121 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 101 | 155 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 108 | 153 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-24 | 121 | 136 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-24 | 136 | 157 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGAEEAGEIR QASDKTTQNL ISRNQFLAWK RQKDAELSAK QAEAARKRQQ DIASGRVLMN 60 GRQRSKTLSL GVLEIVDQSI ITTTLDLDEE KLSSCFVNMG RVKLEIKRIE NTTNRQVTFS 120 KRRNGLIKKA YELSILCDID IALIMFSPSD RLSLFSGKTR IEDVFTRFIN LPNQERDNAI 180 IFPDPGRRPR YEPDPARFTS MEDYEVCEKQ LLDTLTHVVQ RREHLLSSHL SSYETSTMQQ 240 SIAGPFLNGV AEGWLPENGH NQAHLFDASA HSNQLRELSS AMYEPLLQGS SSSSNQNNMS 300 ECHVTNHNGE MFSEWAQAYS SSAMFASINQ HGGVGPSIEE MMPGQQSEIP AMTTTTEAQQ 360 AKHEVVDDYE TRVPQLSSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-19 | 99 | 188 | 1 | 91 | MEF2 CHIMERA |
6bz1_B | 9e-19 | 99 | 188 | 1 | 91 | MEF2 CHIMERA |
6bz1_C | 9e-19 | 99 | 188 | 1 | 91 | MEF2 CHIMERA |
6bz1_D | 9e-19 | 99 | 188 | 1 | 91 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676753858 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189271 | 1e-95 | AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022545267.1 | 1e-171 | agamous-like MADS-box protein AGL104 isoform X2 | ||||
Swissprot | Q9LM46 | 1e-147 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A0D3DQX0 | 1e-176 | A0A0D3DQX0_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g071330.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-141 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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