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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 25152.1 Da PI: 10.4573 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.5 | 9.7e-38 | 24 | 179 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg.......... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + 676744174 24 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvraeeges 119 79**************************************************************99999776.2222222222220...13444444455 PP TCP 89 ...........................................................k 89 + 676744174 120 gpggggglsvgptmgtslmsgssgvggfwavparpdfgqvwsfatgappemlftqqqqpA 179 567777777777777778888888888888888888888887776666666665533221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 30 | 84 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-33 | 30 | 191 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MTNNDGTVTN GVIAEQTNKG TLNAVKKPPS KDRHSKVDGR GRRIRMPIIC AARVFQLTRE 60 LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTASLS TSSPFTLGKR VVRAEEGESG 120 PGGGGGLSVG PTMGTSLMSG SSGVGGFWAV PARPDFGQVW SFATGAPPEM LFTQQQQPAT 180 LFVRHQQQQQ QQQQASAAAA MGEASAARVG NYLPGHHLNL LASLSGGNTG SGRREEDDPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00499 | DAP | Transfer from AT5G08330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744174 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288561.1 | 1e-130 | transcription factor TCP21 | ||||
Swissprot | Q9FTA2 | 1e-118 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | R0GX40 | 1e-129 | R0GX40_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1365s0040.1.p | 1e-130 | (Capsella grandiflora) | ||||
STRING | XP_006288561.1 | 1e-130 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-88 | TCP family protein |
Publications ? help Back to Top | |||
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