PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676700830

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TCP

Protein Properties

Length: 275aa MW: 29580.1 Da PI: 6.7663

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676700830	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.6	3.1e-36	30	104	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++ +a ++ + 676700830 30 PVSKRPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTVPAIAVsvN 104 5689************************************************************88888444321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.4E-29	36	112	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.776	36	90	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MKEEENDPVR QQEVGFLQPM TDSLVGQRKP VSKRPSKDRH TKVEGRGRRI RMPAGCAARI 60 FQLTRELGHK SDGETIRWLL ERSEPAIIEA TGTGTVPAIA VSVNGTLKIP SDSQPQVECN 120 GGPGDLTMKR RKRNCTSEFV DVNGQDSSVT SGLAPITASS YGFNLINAAN TQNFMPFWPT 180 AFVTGGPNQM GHMWALPTVA AAAAAPSFLN VGTRPVDSYV SNASDAEQQM ETSCGGGAAT 240 QTLRDFTLEI YDKKELQFLG GSGNNNTSPS SCPET

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	Transfer from 495258	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676700830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401898.1	1e-154	transcription factor TCP19
Refseq	XP_024012296.1	1e-154	transcription factor TCP19
Swissprot	Q9LT89	1e-119	TCP19_ARATH; Transcription factor TCP19
TrEMBL	V4NBQ0	1e-152	V4NBQ0_EUTSA; Uncharacterized protein
STRING	XP_006401898.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-119	TCP family protein