PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23237_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 224aa    MW: 26063 Da    PI: 9.721
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23237_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-19666257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+++t+eql +Lee+++   r+p+a ++++++++l    +++ ++V++WFqN++a++++
  RrC23237_p1  6 STRWCPTTEQLMILEEMYRTgIRTPNAVQIQHITAHLafygRIEGKNVFYWFQNHKARDRQ 66
                 58*****************99*************************************996 PP
2Wus_type_Homeobox117.65.6e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+Pt+eQ++iLee+y++G+rtPn+ +iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
        RrC23237_p1  5 ASTRWCPTTEQLMILEEMYRTGIRTPNAVQIQHITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67
                       579***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0021471IPR001356Homeobox domain
PfamPF000467.9E-17766IPR001356Homeobox domain
CDDcd000867.65E-4767No hitNo description
SuperFamilySSF466891.45E-10767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-7866IPR009057Homeodomain-like
PROSITE profilePS500719.5391267IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSPIASTRWC PTTEQLMILE EMYRTGIRTP NAVQIQHITA HLAFYGRIEG KNVFYWFQNH  60
KARDRQKLRK KFAKQLHQQQ LQQIKLKPSM MSQPLNNIID HNNPYYHNHP RPYDHMSFAC  120
CSQPSPVCLS HQGIRVEAQS KVVNEYYYNK SGPEDMLMQK PTTGQNSSYG RDWMMTIDMG  180
PRPSYPSSPI PCCDLMMNSR KIPPKTLELF PISSINSKQD ISKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894321e-163AC189432.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068E07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133866.11e-128PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_013740679.11e-128WUSCHEL-related homeobox 3
RefseqXP_018466212.11e-128PREDICTED: WUSCHEL-related homeobox 3-like
SwissprotQ9SIB41e-100WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A398A5611e-130A0A398A561_BRACM; Uncharacterized protein
STRINGBra000484.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-97WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]