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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14967_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 26533.2 Da PI: 5.569 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.7e-31 | 78 | 136 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+ RrC14967_p1 78 NDVWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 136 7*************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-31 | 68 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.15 | 72 | 138 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 74 | 138 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-36 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 78 | 136 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MADDWDLHAV VRGCSAVSSS ATTTTTTVFS SGVSSHTSPV FTFERQSNTV VFGESRDLYT 60 PKIQHKKVCH VAAEALNNDV WAWRKYGQKP IKGSPYPRGY YRCSTSKGCL ARKQVERNRS 120 DPTMFIVTYT AEHNHPAPTH RNSLAGSTRQ KSSDQPTAKS PTTTIAAYST SPVTSSADDF 180 VLPLEDIEVG GGGDEDLLSL SDTVVSEDFF EGLEEFAVGD SFSGNSAPAS FDLSWVVNSA 240 ATASGGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-21 | 79 | 139 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-21 | 79 | 139 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430040 | 0.0 | KF430040.1 Brassica rapa WRKY transcription factor 22 (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453027.1 | 1e-162 | PREDICTED: WRKY transcription factor 22-like | ||||
Swissprot | O04609 | 1e-144 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A0D3DZQ4 | 1e-152 | A0A0D3DZQ4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E4W9 | 1e-152 | A0A3P6E4W9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g003610.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7810 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-120 | WRKY family protein |