PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G050000.1
Common NamePHAVU_005G050000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 269aa    MW: 30178.2 Da    PI: 6.6504
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G050000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.61e-54851891102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+
  Phvul.005G050000.1  85 QLQMFWSDQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDV 175
                         89*****9977889***************************************************************************** PP

               NF-YC  89 fdflvdivprdelk 102
                         fdflvdi+prdelk
  Phvul.005G050000.1 176 FDFLVDIIPRDELK 189
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.74E-3464179IPR009072Histone-fold
PfamPF008082.3E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.1E-37108185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDKSEVTPQR QQQQQQQHVM GVAAGASQMA YSHYQTAPMV AAGTPAVAVP SQTQAPGAFS  60
SSAHQLAYQQ AQHFHHQQQQ HQQQQLQMFW SDQMQEIEQT IDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRNDVFDFLV  180
DIIPRDELKE EGLGITKATI PLVGSPADIP YYYVPPQHPV GPPGMIMGKP VDQAALYSTQ  240
QPRPPMAFMP WPHTQPQPQH SPQQQTDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-5793185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G050000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149200.10.0hypothetical protein PHAVU_005G050000g
TrEMBLV7BTC10.0V7BTC1_PHAVU; Uncharacterized protein
STRINGXP_007149200.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-79nuclear factor Y, subunit C2