PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240273.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CO-like
Protein Properties Length: 480aa    MW: 53282.3 Da    PI: 4.7681
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240273.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-081560342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    +r C+ +  k++++fC  ++ +lC+ C  + H+       H++v+l
  XP_008240273.1 15 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 60
                    678*****************************66889999998875 PP
2CCT682.6e-23410453144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_008240273.1 410 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 453
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-101360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.4951360IPR000315B-box-type zinc finger
PfamPF006433.7E-71560IPR000315B-box-type zinc finger
CDDcd000213.49E-81660No hitNo description
PROSITE profilePS5101716.083410452IPR010402CCT domain
PfamPF062036.7E-18410452IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MITEKKANAM GGNTARACDS CLIKRARWFC AADDAFLCQR CDGSVHSANQ LASRHERVKL  60
QAASSKPNQS TLLAADQSPP AWHKGFTRKA RTPRHNNKPP FMAKDDKEKV SLNPPLPFVP  120
EIGCEEANYM DDDGENEDLE QLLYRVPIYD PFAAELCNMS SHEVGNITSA INLDDEVTEM  180
GRGNHHEVGD DEEENNNNNY GGNDLDNLPG FLPSDMELAE FAADVENLIG GGLDDEDSGD  240
IKGVLGLLDD SKLEGDGGVD VCMKNVDINE DRKAVKVEEE AEGMEFNPSM LDWNSDYELR  300
LSSSPLPMGG EEEEKVVFLM GAQSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS  360
PWTTGTRPEL NPDDGWLDCM GMWGSDQIHQ SHGHGESAGC VGGRGDDRGR EARVSRYREK  420
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRTSGSNFVG SSSSNSSKTA AAAFPYLIHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420436RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008240273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240273.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A251PC570.0A0A251PC57_PRUPE; Uncharacterized protein
STRINGXP_008240273.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.15e-80B-box type zinc finger protein with CCT domain