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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 258aa MW: 28972.8 Da PI: 5.8696 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.5 | 2.7e-55 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql +fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi CCG024145.1 82 QLLMFWTNQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 179 6889****988889************************************************************************************ PP NF-YC 96 vprdelk 102 +prdelk CCG024145.1 180 IPRDELK 186 ****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.1E-34 | 60 | 176 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 96 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-21 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDQSQQTRQQ QSQQQPVVAG AGQMAYASTP YQTAPLVASG TPSIAIPSST QSPATFSNSP 60 HQLTYQQAQH FHHQQQQQQQ QQLLMFWTNQ MQEIEQTTDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPVG PPADLPYYYV PQHPVGPPGM IMGKPVDQAA AYEAQQPQPP 240 VALMPWLQTQ PQQQQSDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-59 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214598 | 0.0 | AC214598.1 Populus trichocarpa clone POP052-F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008715.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008716.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008717.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008718.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008719.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008720.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011008721.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 6e-80 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | B9HGM5 | 0.0 | B9HGM5_POPTR; NF-YC family protein | ||||
STRING | POPTR_0007s07830.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12372 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-81 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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