PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00479g00005.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 362aa MW: 40884.1 Da PI: 10.3915

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00479g00005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.7	2.5e-39	89	242	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..........seceae 76 ++k+ r+ ki T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL++++k ai elt+ s+++a s+c Peaxi162Scf00479g00005.1 89 PKKRERSCKILTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLFTNSKLAIEELTNWSTDQAhhpdiagatkSSC--- 170 68999*********************************************************777773333332222222... PP TCP 77 sssssasnsssg.....................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++++ + + k +++++k++ ++++a+s+ +a+esr arararert +km + Peaxi162Scf00479g00005.1 171 ---NETA-K--NgasptsecedlaiatneglerKPKRAKEKNEVKNHEATSHVLIARESRDMARARARERTIKKMWSR 242 ...1111.1..1223455667788888888885555555589999999998999999***************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-36	90	240	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.928	91	149	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.693	221	238	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MFPASNSTGN PLPHPSSTFH SSSPFLGLNG NQILLHHYQD QFSTHYKNAL LRDSTANINN 60 MSLSANNIIN RPNKSYFDSL RSFPSKKKPK KRERSCKILT SQGPRDRRVR LSIGIARKFF 120 DLQEMLGFDK PSKTLDWLFT NSKLAIEELT NWSTDQAHHP DIAGATKSSC NETAKNGASP 180 TSECEDLAIA TNEGLERKPK RAKEKNEVKN HEATSHVLIA RESRDMARAR ARERTIKKMW 240 SRIETSERSA NYSQIKSNFF GKKDIREMEE QFCKNKLQAS EGPNKEMFQG SGVTKIKIKP 300 SLVSGFHPNN FYAPIDSAAY YGSSSFNIEN WDTSRNIMKT ITTAAMINST TPPSQGKLWL 360 KL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MFPASNSTGN PLPHPSSTFH SSSPFLGLNG NQILLHHYQD QFSTHYKNAL LRDSTANINN  60
MSLSANNIIN RPNKSYFDSL RSFPSKKKPK KRERSCKILT SQGPRDRRVR LSIGIARKFF  120
DLQEMLGFDK PSKTLDWLFT NSKLAIEELT NWSTDQAHHP DIAGATKSSC NETAKNGASP  180
TSECEDLAIA TNEGLERKPK RAKEKNEVKN HEATSHVLIA RESRDMARAR ARERTIKKMW  240
SRIETSERSA NYSQIKSNFF GKKDIREMEE QFCKNKLQAS EGPNKEMFQG SGVTKIKIKP  300
SLVSGFHPNN FYAPIDSAAY YGSSSFNIEN WDTSRNIMKT ITTAAMINST TPPSQGKLWL  360
KL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803760.1	1e-168	PREDICTED: transcription factor CYCLOIDEA-like
Refseq	XP_016462466.1	1e-168	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	A0A1S3ZDU9	1e-166	A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBL	A0A1U7YYF6	1e-166	A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRING	XP_009803760.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.1	5e-24	TCP family protein