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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_47952g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LFY | ||||||||
Protein Properties | Length: 210aa MW: 23693.8 Da PI: 5.0004 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 173.8 | 1.5e-53 | 1 | 170 | 1 | 157 |
FLO_LFY 1 mdpeafsaslfkwdpraaa..aapparlleeaavseapleaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmksl 93 md+e+f++ +f+wd+r+a aap+a+ + ++ + +ple ++ rk l++le+lf++yGvry+t+ak++e+Gft++tLv+m++ee++dlmk+l MA_47952g0010 1 MDAEHFPVGFFRWDQRPAPaaAAPAATTTVFNKDHGRPLEIILPMNGRKeLKSLEDLFREYGVRYSTLAKMTEMGFTANTLVNMTEEEIEDLMKTL 96 9*************777662233333333333445677888999998888********************************************** PP FLO_LFY 94 seifrldllvGeryGikaavraerrrlee..........eeaekkrrkllsedeetaldalsqeglseepvqe..e 157 +ei+++dll+GeryGik+a+rae++rl++ +e ++r+++l++d++t a+++eg+s+e +++ MA_47952g0010 97 VEIYHMDLLIGERYGIKSAIRAEKKRLQDclemqrleilSE--AERKRILHDDQNTFAAAMTSEGTSKELRANdpL 170 **********************************9997544..55555799******************9887432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.5E-38 | 1 | 150 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDAEHFPVGF FRWDQRPAPA AAAPAATTTV FNKDHGRPLE IILPMNGRKE LKSLEDLFRE 60 YGVRYSTLAK MTEMGFTANT LVNMTEEEIE DLMKTLVEIY HMDLLIGERY GIKSAIRAEK 120 KRLQDCLEMQ RLEILSEAER KRILHDDQNT FAAAMTSEGT SKELRANDPL IFPESTSADH 180 APMNIASCKD STLILQNSNQ AQFCGSGLMX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ude_A | 1e-38 | 47 | 142 | 4 | 98 | GINLFY PROTEIN |
4ude_B | 1e-38 | 47 | 142 | 4 | 98 | GINLFY PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118634 | 0.0 | BT118634.1 Picea glauca clone GQ04008_F24 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002966714.2 | 1e-30 | floricaula/leafy-like protein FL1 | ||||
Refseq | XP_002978027.1 | 1e-30 | floricaula/leafy-like protein FL1 | ||||
Swissprot | O04407 | 1e-134 | NEED_PINRA; Floricaula/leafy-like protein FL1 | ||||
TrEMBL | A0A455R0N4 | 1e-134 | A0A455R0N4_9SPER; NEEDLY-like protein | ||||
STRING | EFJ20684 | 5e-30 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP19266 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 9e-20 | floral meristem identity control protein LEAFY (LFY) |