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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI03G05880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 36579.6 Da PI: 5.6761 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 125 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp++ +r++lg++g+aeeAa a+++ +++++g OMERI03G05880.1 125 TKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 175 69********.7*********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 125 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-33 | 126 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-28 | 126 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 126 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 126 | 184 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.36E-27 | 127 | 183 | No hit | No description |
PRINTS | PR00367 | 2.0E-7 | 127 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEEEED 60 DDDDGDEFEL SDDGDESLAV SCVSSPKSKA PSFSFSSDVS SSSRPRRRVA AAAGRRKASK 120 KKKNTKYRGV RRRPSGRFAA EIRDPKKGRR VWLGTYGSAE EAAMAYDREA RRIRGKGARL 180 NFPRDGEASP RRSNDRPCWT IDLNLPAVAV SDDDDAAMAV DAADADAGSA GHAVAYADQE 240 ASNAVKSKIK QGPYDEQLAS ATPELMEEDA SSSRNRVSMS MALQLQYAAM IAECDREMEE 300 IAAVERDLER RRRQVFERRG HLVRQASLLL D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 123 | 183 | 2 | 63 | ATERF1 |
3gcc_A | 2e-19 | 123 | 183 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 43 | TRKRKS |
2 | 105 | 122 | RRRVAAAAGRRKASKKKK |
3 | 115 | 133 | RKASKKKKNTKYRGVRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ304840 | 0.0 | AJ304840.1 Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632275.1 | 1e-148 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A0E0CW91 | 0.0 | A0A0E0CW91_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA03G0058400.1 | 1e-151 | (Oryza glaberrima) | ||||
STRING | OBART03G06050.2 | 1e-151 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13664 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 2e-24 | ERF family protein |