PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089230.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NF-YC
Protein Properties Length: 265aa    MW: 29898.8 Da    PI: 5.8696
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089230.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.41.4e-55801841102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw +q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl
  XP_010089230.1  80 QLQMFWVNQmqeIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 174
                     89*****9988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdi+prdelk
  XP_010089230.1 175 VDIIPRDELK 184
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.06E-3458174IPR009072Histone-fold
PfamPF008082.3E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-37103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDQSEQTQQQ QQQQQPVVGM VAGYAPQSYQ TAPMVASGAP AAPVPSQTQA PATFSNSPHQ  60
LAYQQAQHFH HQQQQQQQQQ LQMFWVNQMQ EIEQTADFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVIFA KACEMFILEL TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR  180
DELKEEGLGV TKATLPVVGS PADMPYYYVP PQHPVGPTGM IMGKPVDQAA MYAAQQPRPP  240
MAFVPWPQTQ PQQQQQQQPQ QQTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5888180395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089230.10.0nuclear transcription factor Y subunit C-2
TrEMBLW9QHS70.0W9QHS7_9ROSA; Nuclear transcription factor Y subunit C-2
STRINGXP_010089230.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-81nuclear factor Y, subunit C2