PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00528.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family TCP
Protein Properties Length: 337aa    MW: 37075.3 Da    PI: 9.9928
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00528.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.11.5e-46902242136
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 
                       ++kkdrhski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WLl+++k+aik+l++ + ++a +c++++ss s++ +   +++++a
  Migut.H00528.1.p  90 TVKKDRHSKIFTAQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKAAIKDLVQMKHNAAASCSKSTSSPSSDCELVISSESNA 182
                       79**************************************************************99999999555555555533333555555 PP

               TCP  95 akskksqksaasalnlakesrakarararertrekmriknkl 136
                       a   ++   a ++++  kesrakarararertrekm  kn++
  Migut.H00528.1.p 183 AADPFEIGAADTKRKCVKESRAKARARARERTREKMTFKNNN 224
                       55556666666679**********************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3791219IPR005333Transcription factor, TCP
PROSITE profilePS5136936.1392150IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.483200217IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFSKNSYLHP QATSSSSSSY PRGSYDLNSV EFLLHHHPEL FSGHYLTTAG ANSPLIHSAA  60
LMLNQDTASM FPNGDPSSAA AASTLQRKQT VKKDRHSKIF TAQGPRDRRV RLSIGIARKF  120
FDLQEMLGFD KPSKTLDWLL TKSKAAIKDL VQMKHNAAAS CSKSTSSPSS DCELVISSES  180
NAAADPFEIG AADTKRKCVK ESRAKARARA RERTREKMTF KNNNLCCSDF NPLVPIHYRN  240
NNNNNNNQVG YFQSTHGGAG GQDLVQESSV VKRKMKNPSF FGAFQQNVFV SRDSSSNYGG  300
PSANNNNAPE NWDFFASQSN LCAILDQHKF INSSNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1497150154Putative transcription factor PCF6
5zkt_B8e-1497150154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00528.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825700.0AC182570.2 Erythranthe guttata clone MGBa-64L10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856137.10.0PREDICTED: transcription factor CYCLOIDEA-like isoform X2
TrEMBLA0A022RX260.0A0A022RX26_ERYGU; Uncharacterized protein
STRINGMigut.H00528.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-30TCP family protein