PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000190029
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 277aa    MW: 31174.2 Da    PI: 6.2792
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000190029genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.91.7e-54891931102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+ fw++q   ieka+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv
  MDP0000190029  89 QLQEFWSDQmqdIEKASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 184
                    89*****9977889********************************************************************************** PP

          NF-YC  94 divprdelk 102
                    di+prdelk
  MDP0000190029 185 DIIPRDELK 193
                    ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.89E-3363183IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.5E-37103175IPR009072Histone-fold
PfamPF008084.8E-21111174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDHSEQTLQQ QQQHHQQQPA VGVVAGSGQM TSYPPPSYQT APMVASGTPA VSVPSPTHPP  60
TTFPDPSHQL AYQKIQHFHH QQQVQQQMQL QEFWSDQMQD IEKASDFKNH SLPLARIKKI  120
MKADEDVRMI SAEAPVIFAK ACEIFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF  180
DFLVDIIPRD ELKEEALGVT KATLPVVGSP ADVPYYYVPQ QHPVGAPGMI MGKPVDQAAM  240
YASQQPRPPV SFMPWAQSQP QQPQQQQQQA QQQQTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-5797189395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.120150.0bud| cell culture| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383141.10.0nuclear transcription factor Y subunit C-2
SwissprotQ655V56e-81NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A498IT730.0A0A498IT73_MALDO; Uncharacterized protein
STRINGXP_008383141.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-78nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]