PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000148340
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CAMTA
Protein Properties Length: 907aa    MW: 102664 Da    PI: 7.3106
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000148340genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.51.9e-51271423118
           CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                    + k+rwl+++ei+aiL n++ +++ l++ + pksg+++L++rk +r+frkDG++wkkkkdgktv+E+he+LKvg  e +++yYah+e+ ptf rrc
  MDP0000148340  27 EAKSRWLRPNEIHAILYNYKYFTIXLKPVNSPKSGTIVLFDRKLLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGXEERVHVYYAHGEDSPTFVRRC 122
                    459********************************************************************************************* PP

           CG-1  99 ywlLeeelekivlvhylevk 118
                    ywlL+++le+ivlvhy+e++
  MDP0000148340 123 YWLLDKSLEHIVLVHYRETQ 142
                    *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.2221147IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-7225142IPR005559CG-1 DNA-binding domain
PfamPF038594.2E-4527140IPR005559CG-1 DNA-binding domain
SuperFamilySSF812969.8E-12359446IPR014756Immunoglobulin E-set
CDDcd002043.74E-14519653No hitNo description
SuperFamilySSF484031.24E-16520655IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-16540656IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-7556623IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.671561626IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.155594626IPR002110Ankyrin repeat
SMARTSM002481.8E-6594623IPR002110Ankyrin repeat
PROSITE profilePS500966.559705734IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.98742768IPR000048IQ motif, EF-hand binding site
SMARTSM0001539757779IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.98758787IPR000048IQ motif, EF-hand binding site
SMARTSM000150.097780802IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.743781805IPR000048IQ motif, EF-hand binding site
PfamPF006120.0023783802IPR000048IQ motif, EF-hand binding site
SMARTSM0001522860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693862890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MENQLVGSEI HGFRTMQDLD VATTMEEAKS RWLRPNEIHA ILYNYKYFTI XLKPVNSPKS  60
GTIVLFDRKL LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG XEERVHVYYA HGEDSPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQEVGSPVTP VNSNSSSXSD PSAPSFLSEE HDSVANNAYC  180
AGENELQELG DGLTVNNHEQ RLHDINTLEW DELLVKNDXE GDNISGYDQQ NQVVGNGSIS  240
GGASSLSAEI SSFGNLTNPT AGSENIQFNL SGTPYVETLV GDVNSNXQRR DYNAKADVLH  300
NNGLHSQDSF GRWINQIMTD SPASVEDPVL DSSFSAAQNS FASPTMNHLQ SSVPQQIFNI  360
TDISPTWAFS NEKTKILITG FLHQEFFQLA KSDLLCICGD VCLPAEIVQA GVYRXFVPPH  420
LPRVVNLFMS IDGHKPISQV LNFEYRAPVL SDTLVSSEGN KWEEFQAQMR LAYLLFSSSH  480
SLNIISSKVP PNALKEAKKF SHRTXHISNN WPYLMKVVED NKTPLXLAKD SLFELILKNR  540
LKDWLLEKVV QVSKTKEYDA HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH  600
WAAYCGREKM VAVLLSAGAN PNLVTDPTPD NPGGSTAADF AFMKGYDGLA AYLSEKALVE  660
QFKAMSVAGN VSGSLEISST YAANSENLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENA  720
LKKKTKAVQY SIPEAEARGI IAALKIQHAF RNYETKKKIQ AAARIQYRFR TWKMRQEFLS  780
LRRQTIKIQA AFRGFQVRRQ YRKVLWSVGV LEKXVLRWRL KRRGLRGLNV APAXVSVDQD  840
QESDTEEDFY RASRKQAEER VERSVIRVQA MFRSKKAQEE YTRMKMAHNQ ATLEFDDFLD  900
PDAIMDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16783RKLLRNFRKDGHNWKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165400.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505906.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A498IFY70.0A0A498IFY7_MALDO; Uncharacterized protein
STRINGXP_009369951.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]