PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017907
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 273aa    MW: 30244.9 Da    PI: 7.7975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017907genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-1764113255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp+    +  r +lg+f+tae+Aa a++ a++++ g
  Lus10017907  64 RYRGVRRRP-WGRYAAEIRDPV----SkERRWLGTFDTAEDAALAYDFAARNMLG 113
                  69*******.**********64....34999******************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-2863120No hitNo description
PfamPF008476.2E-1064112IPR001471AP2/ERF domain
SMARTSM003803.4E-2964127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-2864120IPR001471AP2/ERF domain
PROSITE profilePS5103221.52264121IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2164121IPR016177DNA-binding domain
PRINTSPR003671.2E-96576IPR001471AP2/ERF domain
PRINTSPR003671.2E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEEASTTLNG MTTTSSLPEY PYLLYPTPTD PLHHRHISSS STTKRTPPPP AAATIAAANG  60
VTARYRGVRR RPWGRYAAEI RDPVSKERRW LGTFDTAEDA ALAYDFAARN MLGFKARTNF  120
VYPSDVPPLP PVDPHCFCSH HHHHRFPPFT HFNKHLACTT SSPVINNHHH HHTTASTFHQ  180
HQHHHPILAA PPPPQLRKND FFNSSLSSTA VSPPPSTLVG SAVPAPSEDK YCMEFFPQEA  240
SGSGLLEEVI QGFFPKPPPE KELSVMRNEC GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1865120662ATERF1
3gcc_A1e-1865120662ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017907
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100179070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.15e-13DORNROSCHEN-like