PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G08060.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 402aa    MW: 43170.2 Da    PI: 4.4789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G08060.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19137186255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  LPERR09G08060.2 137 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 186
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.10E-32137195No hitNo description
Gene3DG3DSA:3.30.730.101.9E-32137196IPR001471AP2/ERF domain
PROSITE profilePS5103223.933137194IPR001471AP2/ERF domain
SMARTSM003806.9E-37137200IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22137195IPR016177DNA-binding domain
PfamPF008476.8E-12138186IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAKKRGRRVT ADVLWPGKSA AKAGRGFGVE EEDFEADFRE  60
FEMGLSEDEA EDGGEEEEDV VEVVSPPARL AVVAATKAAP AAATEVALPT ADGILTPKPV  120
QHDGPAARSA KRKRKNQYRG IRQRPWGKWA AEIRDPSKGV RVWLGTYNTA EEAARAYDAE  180
ARKIRGKKAK VNFPDESLVA QKPSLKQNAA KQEKLSPPLK TCDNDAFIPL NNADNDLFAM  240
FAFSDKNVPA KPVEPAGFLP PVNPLASTEA FEMNMLSDES SNSFGSSDFG WDDDTLTPDY  300
TSVFDPNSTV PAYGEPAYLP VGAPKRMRNN YGVAVPQGTG MPNLTQNMAP FDPEIKYLPL  360
PYVESSSDES MDSLLQNEAT QDGASNVGIW SLDDLFMAAG AY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19136194160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19137194563ATERF1
3gcc_A1e-19137194563ATERF1
5wx9_A3e-191371961474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G08060.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660653.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0D9XE190.0A0A0D9XE19_9ORYZ; Uncharacterized protein
STRINGLPERR09G08060.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-27ERF family protein