PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14810.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 277aa    MW: 29433.8 Da    PI: 5.4221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20143192255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae+Aa+a+++a+ +++g
  LPERR08G14810.1 143 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDRAAVEFRG 192
                      8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.106143200IPR001471AP2/ERF domain
PfamPF008478.0E-13143192IPR001471AP2/ERF domain
SMARTSM003801.7E-37143206IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23143201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-32143200IPR001471AP2/ERF domain
PRINTSPR003673.3E-11144155IPR001471AP2/ERF domain
CDDcd000186.52E-19146200No hitNo description
PRINTSPR003673.3E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTNRISAMAA SSNQEYMIRF DGVHIEDDPS PSSAAAEPPP PPPFAGRAIS SEREHTVIVA  60
ALLHVISGYR TAPPEVFPAA AAAPAMCAVC GMDQCLGCEF FAGESGVVSF DAGAGAEKIS  120
SATAAAAPAA AAGQRRRRKK KNKYRGVRQR PWGKWAAEIR DPRRAVRKWL GTFDTAEDAA  180
RAYDRAAVEF RGPRAKLNFP FPEQQISMHE HDAAAANSKS DTLSPSPCSA DADELQGGGG  240
GGGGEAGDQL WEGLQDLMKL EEEGGLSWFP QSSDSWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-22140201264ATERF1
3gcc_A9e-22140201264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649367.11e-118ethylene-responsive transcription factor ERF109
TrEMBLA0A0D9X8U40.0A0A0D9X8U4_9ORYZ; Uncharacterized protein
STRINGLPERR08G14810.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-22redox responsive transcription factor 1