PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0903.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 412aa    MW: 46000.8 Da    PI: 5.2592
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0903.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.62.3e-551604102263
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          ve L+++A +++sg+l+la+a+L+rl+++ +sp g+p+qR+a+yf+eAL++ l+          +ps+ s  + +e++ a+k+fs +sPi
  Kaladp0024s0903.1.p 160 VEELIRAAGCFDSGELQLAHAMLSRLNQRlRSPLGKPLQRAAFYFKEALNSLLSV-------PTRPSRPSILEIVESIRAHKAFSSISPI 242
                          689*************************99*********************9998.......444455555669**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          + fs + +Nqa+le++e+++ vHi+Df+i+ G+Q+++L++++a+R+    ++   +RiT+++++e   ++e + ++++L +fA+ l+++f
  Kaladp0024s0903.1.p 243 PMFSDFSTNQAVLESIESSTFVHIVDFEIGLGGQYASLMREIADRSvsskQSRVAIRITAIVEEE--FEKESRLVRDNLCQFAHDLQIRF 330
                          **********************************************876444569********66..889999***************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealey 263
                          +++++  +++e+l+ +++++  +E+++V+l    +r             +++  ++ + P+ vv+v +e  + h++ sF + f+e ley
  Kaladp0024s0903.1.p 331 RIDFVSLRSFEMLSEKSIDFTDDEKTIVHLTPVTFRRT---------GAKFVIDLRLVVPNAVVLVTSEewMTHETVSFRRSFVEGLEY 410
                          ****9999***********************9888876.........3469999********999988878999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.788133411IPR005202Transcription factor GRAS
PfamPF035147.9E-53160410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRFPGLTPHS AAHLSSSFIP NTAPSSTANF CFEPTSVLDL RRSPSPVHDH FPTTSISDVL  60
SQTEDLSLLP SINDHHQQAA VHNLDDWDSI MRELGLHDDF APSALKAITF PPHHSPSSES  120
GLTQFHDLAS SAIPNPDQPL FSPSDLEFTD WNTSVGFDFV EELIRAAGCF DSGELQLAHA  180
MLSRLNQRLR SPLGKPLQRA AFYFKEALNS LLSVPTRPSR PSILEIVESI RAHKAFSSIS  240
PIPMFSDFST NQAVLESIES STFVHIVDFE IGLGGQYASL MREIADRSVS SKQSRVAIRI  300
TAIVEEEFEK ESRLVRDNLC QFAHDLQIRF RIDFVSLRSF EMLSEKSIDF TDDEKTIVHL  360
TPVTFRRTGA KFVIDLRLVV PNAVVLVTSE EWMTHETVSF RRSFVEGLEY G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067182.11e-120scarecrow-like protein 15
SwissprotO232101e-91SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A4D6NYX11e-130A0A4D6NYX1_PAESU; Transcription factor GRAS 2
STRINGPGSC0003DMT4000330371e-119(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.16e-94GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]