PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008863
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 262aa    MW: 28696.6 Da    PI: 9.6855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32077343PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20148197255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa+a+++a+ +++g
  Han008863 148 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEAAARAYDRAAIEFRG 197
                59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-21147205No hitNo description
SMARTSM003805.9E-38148211IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22148206IPR016177DNA-binding domain
PfamPF008475.7E-14148197IPR001471AP2/ERF domain
PROSITE profilePS5103225.185148205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32148205IPR001471AP2/ERF domain
PRINTSPR003677.0E-12149160IPR001471AP2/ERF domain
PRINTSPR003677.0E-12171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTVNRPKDEA TATATTVGHH QFIPQPPWRR LTNDEEALVM VNALKNVIMG GHQNGYDLSL  60
LSQPEYPTAT NRLAALGYSV PVTTSVTDTT GTVNIPDTCQ VCKINGCLGC NYFHDDMNLN  120
GVGISIGSGA GNGNSAGAGG PIKKKKKNYR GVRQRPWGKW AAEIRDPRKA ARVWLGTFET  180
AEAAARAYDR AAIEFRGPRA KLNFAFSDYT TSSPVAESTQ PVATTRREXX NVTRKKLENN  240
SRRKMDVAEE LTVPEYKPVV EX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23145204262ATERF1
3gcc_A2e-23145204262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022028209.11e-150ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ067e-34EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A251V7L31e-149A0A251V7L3_HELAN; Putative DNA-binding domain-containing protein
STRINGXP_006423025.13e-53(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-32redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]