PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007269
Common Nameham31
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24286.5 Da    PI: 6.4063
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764429PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.78.4e-252170251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n++ r vt+skR+ngi+ KA+E+ vLCda+v++++++s+gk+yey+s
  Han007269 21 RIDNTIHRLVTYSKRKNGIIRKAKEITVLCDANVSLVVYGSSGKMYEYCS 70
               9***********************************************96 PP
2K-box805.5e-2784175398
      K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                + sg++l++ak+e+lq e++++kke+e++q e+Rhl+Ged++sL+++eL   e++Le++l++iR+kK+e+     + ++k e+ l+eenk L  ++
  Han007269  84 RLSGNKLWDAKHENLQIEIDRIKKENESMQIELRHLKGEDITSLNYEELIAFEDALENGLTHIREKKDEIP----QIMRKHEQVLEEENKHLMYMV 175
                578999**************************************************************985....457888888888888887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.9871272IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-321271IPR002100Transcription factor, MADS-box
CDDcd002651.69E-341391No hitNo description
SuperFamilySSF554552.09E-3313107IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-241434IPR002100Transcription factor, MADS-box
PfamPF003193.1E-182168IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-243449IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-244970IPR002100Transcription factor, MADS-box
PfamPF014862.7E-1893175IPR002487Transcription factor, K-box
PROSITE profilePS5129714.67695181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
XLLSESNLRE RMGRGKIEIQ RIDNTIHRLV TYSKRKNGII RKAKEITVLC DANVSLVVYG  60
SSGKMYEYCS PNTNLTDMLD RYPRLSGNKL WDAKHENLQI EIDRIKKENE SMQIELRHLK  120
GEDITSLNYE ELIAFEDALE NGLTHIREKK DEIPQIMRKH EQVLEEENKH LMYMVQQSEM  180
AAMGDYQADG PFSFRVQPMQ PNLHERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-141286173MEF2 CHIMERA
6byy_B3e-141286173MEF2 CHIMERA
6byy_C3e-141286173MEF2 CHIMERA
6byy_D3e-141286173MEF2 CHIMERA
6bz1_A3e-141286173MEF2 CHIMERA
6bz1_B3e-141286173MEF2 CHIMERA
6bz1_C3e-141286173MEF2 CHIMERA
6bz1_D3e-141286173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021996908.11e-139floral homeotic protein PMADS 2-like
SwissprotQ074742e-91MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLQ84LC21e-144Q84LC2_HELAN; MADS-box transcriptional factor HAM31
STRINGXP_009803901.12e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]