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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han007197 | ||||||||
Common Name | ham91 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24575.8 Da PI: 8.43 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey+s Han007197 10 KIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYIS 59 79**********************************************86 PP | |||||||
2 | K-box | 59.9 | 1e-20 | 71 | 160 | 1 | 89 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 yq++ g +l+++++e++q+ l+kLk+ +++L+re+R++ lGedL+ L++++L Leq++++sl+ +R++K + l + +l+ + +++ Han007197 71 YQTTLGFDLWSSHYERMQETLKKLKDSNNKLRREIRQRvLGEDLDGLDMNDLTILEQHMQDSLTVVRERKVKNLEQRNCNLRLDYDTIHQ 160 667777789***************************8538*******************************9999888777766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.268 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.86E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.03E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-12 | 82 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.422 | 84 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGRIEIQK IENNTNRQVT YSKRRNGIFK KAHELTVLCD AKVSLIMFSN TGKFHEYISP 60 STTTKKIYDM YQTTLGFDLW SSHYERMQET LKKLKDSNNK LRREIRQRVL GEDLDGLDMN 120 DLTILEQHMQ DSLTVVRERK VKNLEQRNCN LRLDYDTIHQ LEKKYGMVEN EVGYESTIAY 180 SNLYGFCENP NNNIIHGSGS GYEPHGLRLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_B | 3e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_C | 3e-15 | 1 | 59 | 1 | 59 | MEF2C |
5f28_D | 3e-15 | 1 | 59 | 1 | 59 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022015758.1 | 1e-152 | floral homeotic protein PMADS 1-like isoform X2 | ||||
Swissprot | Q003J2 | 4e-84 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | Q84LC1 | 1e-155 | Q84LC1_HELAN; MADS-box transcriptional factor HAM91 | ||||
STRING | VIT_04s0023g02820.t01 | 5e-81 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-64 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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