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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han006544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26847.8 Da PI: 7.0316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + r +lg+f taeeAa+a+++a+k+++g Han006544 91 KFRGIRQRP-WGKWAAEIRDPH----KgVRLWLGTFNTAEEAARAYDEAAKRIRG 140 89*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.0E-32 | 91 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.35E-34 | 91 | 147 | No hit | No description |
SMART | SM00380 | 4.7E-37 | 91 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-14 | 91 | 140 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 91 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 91 | 148 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-11 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
XLNILSVRPK MCGEAVISDA DPXLLARPEA KANDLWSEFD TFDCLGWDFK PQTHPSFTGA 60 ATSISKVVTN KEPQYKTPKP SEKKAKPRKN KFRGIRQRPW GKWAAEIRDP HKGVRLWLGT 120 FNTAEEAARA YDEAAKRIRG DKAKLNFHSP VTKKPCVETP TESSVNNSVL STPALVSYDQ 180 LQNQCYYYNN VADDYEFKEQ ISNLETFLGL DHESTQLGEI GVESSHLWMM DDFPVII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 92 | 147 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021973607.1 | 1e-154 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A251UDN4 | 1e-153 | A0A251UDN4_HELAN; Putative DNA-binding domain-containing protein | ||||
STRING | Gorai.011G193600.1 | 9e-57 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-42 | ethylene-responsive element binding protein |