PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005026
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 32796.8 Da    PI: 9.9872
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764427PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-304392251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+
  Han005026 43 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 92
               8***********************************************96 PP
2K-box102.84.5e-341152069100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++a+  s++ e++kLk++ e Lqr++Rh++Ged+esLslke+q+LeqqL+++lk+iR++Kn+ll+e+i+elqkk k++qe+n++L+k+l+e
  Han005026 115 ATDATPRSWTLEYNKLKSRAELLQRNHRHYMGEDIESLSLKEIQNLEQQLDTGLKNIRARKNQLLHESINELQKKGKAIQEQNTTLTKQLKE 206
                46778899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-403493IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.5763494IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-3335120IPR002100Transcription factor, MADS-box
CDDcd002651.14E-4135112No hitNo description
PRINTSPR004046.3E-313656IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003690IPR002100Transcription factor, MADS-box
PfamPF003192.4E-254390IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-315671IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-317192IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.369120210IPR002487Transcription factor, K-box
PfamPF014861.2E-27121204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
ERSNTQPTHT YHKSFTSRKK QQQIHNFPFL AKSMGRGKVQ LRRIENKINR QVTFSKRRGG  60
LLKKAHEISV LCDAEVALIV FSNKGKLFEF STDSCMESIL ERYERYCYSE RQLVATDATP  120
RSWTLEYNKL KSRAELLQRN HRHYMGEDIE SLSLKEIQNL EQQLDTGLKN IRARKNQLLH  180
ESINELQKKG KAIQEQNTTL TKQLKEKEKD KTIPQNTQWE QHNYVDHDTT FFLPQPHPAL  240
NIGGDYNQAT TSAASGGEGA DXKDQPAGPQ SAANIFAPPK VLSVVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-2034106172MEF2C
5f28_B1e-2034106172MEF2C
5f28_C1e-2034106172MEF2C
5f28_D1e-2034106172MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997448.11e-170truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S71e-107AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ84LC01e-169Q84LC0_HELAN; MADS-box transcriptional factor HAM92
STRINGcassava4.1_029935m1e-111(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]