PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han003435
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 196aa    MW: 22178.2 Da    PI: 9.2725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32092362PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-58360PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-193685255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++ a+ kl+g
  Han003435 36 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDRAEEAALAYDIAAYKLRG 85
               59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-323595No hitNo description
SuperFamilySSF541719.15E-233694IPR016177DNA-binding domain
PROSITE profilePS5103222.8533693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-313694IPR001471AP2/ERF domain
SMARTSM003802.1E-363699IPR001471AP2/ERF domain
PRINTSPR003671.3E-103748IPR001471AP2/ERF domain
PfamPF008471.4E-123785IPR001471AP2/ERF domain
PRINTSPR003671.3E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
IHQIPAQINL PNHNTYLSPN PVPMKQVGSP PKPMKLYRGV RQRHWGKWVA EIRLPKNRTR  60
LWLGTFDRAE EAALAYDIAA YKLRGDYARL NFPHLRHNGS HIGCESGVYK PLHSSVDAKL  120
QEICRNLAEG KSIDSGKKKG LRRSKVVEQP EVVKVESSES EGSSPSFLEF TEEESAWGGS  180
DLLEKYPSYE IDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-203593160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022038374.11e-143ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-72RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A251UPZ31e-142A0A251UPZ3_HELAN; Putative integrase-type DNA-binding superfamily protein
STRINGXP_009615540.15e-81(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-56related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]