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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003365 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||||||
Protein Properties | Length: 202aa MW: 22046.4 Da PI: 5.2613 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.2 | 3.6e-07 | 6 | 33 | 28 | 55 |
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 +k +lg+f t eeAa+a++ a+ k++g Han003365 6 NKDLYLGTFSTQEEAAEAYDVAAIKFRG 33 5999*********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.958 | 1 | 41 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-13 | 1 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.18E-16 | 4 | 43 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-11 | 5 | 43 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-12 | 7 | 41 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
GRTAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGVNAVTNF DISRYNVEKI MASNTLLAGE 60 LARRTKEVDT TTTNELLSDQ LLAHNSEPKT ILSDPTADMN MLDWKMTLYD QNRTRPAGLE 120 GDDHSSKLGP HLSNTSSLVT SLSSSREHSP DRNNNLPMVL ETPTSSGSRF LGNPSGNTWV 180 PTAVTATQMR SHIPVFAAWT DA |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022011394.1 | 1e-141 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 9e-40 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A251S6X6 | 1e-139 | A0A251S6X6_HELAN; Putative integrase-type DNA-binding superfamily protein | ||||
STRING | XP_009769992.1 | 3e-60 | (Nicotiana sylvestris) | ||||
STRING | PGSC0003DMT400055210 | 1e-61 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 6e-33 | AP2 family protein |
Publications ? help Back to Top | |||
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