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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002889 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 233aa MW: 25674.4 Da PI: 9.7017 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 52.9 | 1.2e-16 | 2 | 49 | 82 | 128 |
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+vl++ ++++vg+kk vfy g+ pkg+kt+W+mheyrl Han002889 2 YWKATGTDKPVLTSgGTQKVGVKKAPVFYGGKPPKGSKTNWIMHEYRL 49 9***********9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.807 | 1 | 83 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-6 | 2 | 49 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.14E-20 | 2 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
XYWKATGTDK PVLTSGGTQK VGVKKAPVFY GGKPPKGSKT NWIMHEYRLA DSKTISKPPG 60 CNPVNKKASL RLDDWVLCRI YKKHNIQRPV DSDSNDHAMT GMLASIPPSI SLRPTGFNTM 120 LENHEHSVVF DAMLTSNLNS TENVNITTSN LLPVKRSLPN FFWNDEGHTS NSPYTKRFIS 180 DSNSDGGVLV TRTNEEXNGG SIANLLGQQQ ALLGSVGDAG VYRQPYQLPS MNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-25 | 2 | 85 | 97 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-25 | 2 | 85 | 97 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-25 | 2 | 85 | 97 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-25 | 2 | 85 | 97 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-25 | 2 | 85 | 100 | 170 | NAC domain-containing protein 19 |
4dul_A | 6e-25 | 2 | 85 | 97 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-25 | 2 | 85 | 97 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022039226.1 | 1e-166 | NAC transcription factor 56-like | ||||
TrEMBL | A0A251UU14 | 1e-165 | A0A251UU14_HELAN; Putative NAC domain-containing protein | ||||
STRING | Gorai.002G073800.1 | 4e-78 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-48 | NAC domain containing protein 2 |