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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002880 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | ERF | ||||||||||||
Protein Properties | Length: 234aa MW: 26717.8 Da PI: 6.5537 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.3e-21 | 83 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + r++lg+f t+eeAa+a+++a+k+++g Han002880 83 KFRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTPEEAAQAYDEAAKRIRG 132 89*******.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.91E-33 | 83 | 140 | No hit | No description |
SMART | SM00380 | 6.3E-38 | 83 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 83 | 140 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-14 | 83 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 83 | 140 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.196 | 83 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MCGGAVISDD DQVFDRRRKL TPNDLWSEFD TDDLFGWDFK PQNLRSTANK NKTTSVSNKF 60 SNKEPNEKSP KPSLKKAKPR KNKFRGIRQR PWGKWAAEIR DPQKGVRVWL GTFNTPEEAA 120 QAYDEAAKRI RGDKAKLNFD SPPAKKLCVQ TPTESTQSTV HEPPSPSELL NYDQFQNQSY 180 YSNSVNVADD YEFKEQISNL ETFLGLDHEL TQFGGFGGGE LNNLWMMDDF PVII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 84 | 139 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Han.4485 | 0.0 | bud| embryo| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021969959.1 | 1e-175 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 3e-55 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A251UHQ1 | 1e-174 | A0A251UHQ1_HELAN; Putative ethylene-responsive element binding protein | ||||
STRING | Gorai.011G193600.1 | 4e-61 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-55 | ethylene-responsive element binding protein |