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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002724 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | NAC | ||||||||||||
Protein Properties | Length: 243aa MW: 26856.8 Da PI: 9.0065 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.1 | 1.5e-18 | 2 | 49 | 82 | 128 |
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Han002724 2 YWKATGTDKPVMTSgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 49 9************977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.077 | 1 | 83 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-7 | 2 | 49 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-22 | 2 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
XYWKATGTDK PVMTSGGTQK VGVKKALVFY GGKPPKGVKT NWIMHEYRLT DGKTISKPHG 60 SDPTKQKGSL RLDDWVLCRT YKKSNTQRPM DSDGCDHHTM TGMLASIPPS ISLAGGHHPM 120 MQNQETNLLF DVRMNSNETE TDNNTNTNTN NITNLLPLKR SLSGLFWTEE GANGNTGNSS 180 ATYTKRFLTP ESNSDISPMA TRTNEENSGS IASLLSQLPQ TPQLQQQTML GSIEDGVYRH 240 PYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-27 | 2 | 86 | 97 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-27 | 2 | 86 | 97 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-27 | 2 | 86 | 97 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-27 | 2 | 86 | 97 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-27 | 2 | 86 | 100 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-27 | 2 | 86 | 97 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-27 | 2 | 86 | 97 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021992824.1 | 1e-179 | NAC transcription factor 25-like | ||||
TrEMBL | A0A251T7S4 | 1e-177 | A0A251T7S4_HELAN; Putative NAC domain containing protein 25 | ||||
STRING | EOY12852 | 2e-75 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-45 | NAC domain containing protein 2 |