PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han002607
Common Nameham75
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28526.3 Da    PI: 9.0815
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764455PU_refUnigeneView CDS
PUT-169a-Helianthus_annuus-32384PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.74.1e-301059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+
  Han002607 10 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59
               8***********************************************96 PP
2K-box105.85.1e-35821739100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +++a+  s++ e++kLk++ e Lqr++Rh++Ged+esLslke+q+LeqqL+++lk+iR++Kn+ll+e+i+elqkk k++qe+n++L+kk++e
  Han002607  82 AADATPRSWTLEYNKLKSRAELLQRNHRHYMGEDIESLSLKEIQNLEQQLDTGLKNIRTRKNQLLHESISELQKKGKAIQEQNTTLTKKIKE 173
                56788899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.576161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-34286IPR002100Transcription factor, MADS-box
CDDcd002651.58E-42275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.20687177IPR002487Transcription factor, K-box
PfamPF014863.2E-2888171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD  60
SCMDSILERY ERYSYTERQL VAADATPRSW TLEYNKLKSR AELLQRNHRH YMGEDIESLS  120
LKEIQNLEQQ LDTGLKNIRT RKNQLLHESI SELQKKGKAI QEQNTTLTKK IKEKEKDKTI  180
PQNTQWEMHN YVDHDTTFLM PPPPPALNMG GDYNHGGGGS SEGADGRTNE LDLSLQPIYS  240
CHMRCFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-22174173MEF2 CHIMERA
6byy_B7e-22174173MEF2 CHIMERA
6byy_C7e-22174173MEF2 CHIMERA
6byy_D7e-22174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977399.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S71e-117AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ8RVR00.0Q8RVR0_HELAN; MADS-box transcription factor HAM75
STRINGcassava4.1_029935m1e-122(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-94MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]