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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han002587 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | WOX | ||||||||||||
Protein Properties | Length: 249aa MW: 27927 Da PI: 6.3626 | ||||||||||||
Description | WOX family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.9 | 3.1e-22 | 79 | 139 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Han002587 79 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 139 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.5 | 5.8e-33 | 79 | 141 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Han002587 79 RQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 141 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.337 | 75 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 77 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-15 | 77 | 144 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-19 | 77 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.76E-15 | 79 | 141 | No hit | No description |
Pfam | PF00046 | 5.0E-20 | 79 | 139 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEQDEGNNNN NNGGMFVKVM TDEQMEVLRK QIAIYATICE QLVDLHKSLT SHHDLAGVRL 60 GNIYNDPLVT SGGHKFSGRQ RWTPTPVQLQ ILERLFEQGN GTPSKQKIKE ITSELSQHGQ 120 ISETNVYNWF QNRRARSKRK QQVSAPNNNG ESEVETEVES PKPQQNSTST ADDNMCFQNP 180 NACSVDQRAK KVEPVFPSDA SSKPAGNVGQ MSYYGSMLSN PRMDRIIGKM EVPGSYQSYM 240 QGDEYNMTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022012271.1 | 0.0 | WUSCHEL-related homeobox 8-like isoform X1 | ||||
Swissprot | Q5QMM3 | 9e-85 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A251SB26 | 0.0 | A0A251SB26_HELAN; Putative WUSCHEL-related homeobox 8 | ||||
STRING | Solyc02g082670.2.1 | 1e-121 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 5e-77 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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