PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001554
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 298aa    MW: 33122.1 Da    PI: 7.1273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32084534PU_unrefUnigeneView CDS
PUT-169a-Helianthus_annuus-35181PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20128177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Han001554 128 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 177
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-33127187No hitNo description
SuperFamilySSF541713.01E-23128186IPR016177DNA-binding domain
SMARTSM003803.1E-38128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-32128186IPR001471AP2/ERF domain
PROSITE profilePS5103223.499128185IPR001471AP2/ERF domain
PfamPF008477.7E-14129177IPR001471AP2/ERF domain
PRINTSPR003672.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003672.6E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASAVMEFWS VDNMQRFTGG DLMDALEPFI KPDYQNTPPS SSPSTSDPCP FSAFSSSSTS  60
SPSQESGFYP DLYFPTQQPV SSFGVNHLTP SQIHQIQTQI NLPGYNNYLG PKPVLMKQVK  120
SDPKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDI AAYKLRGDYA  180
RLNFPHLRHN GSDFNGYKPL HSSVDAKLQE ICRNLADGKS IDAGKKKSSR RSAAVKKSPA  240
VEKPEVVKIE SSESVGSGGS SPASELSLPE FTEEESAWCA LDNMLEKYPS YEIDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20127185160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022013086.10.0ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-80RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A251SDB00.0A0A251SDB0_HELAN; Putative related to AP2 4
STRINGPOPTR_0005s16690.11e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-57related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]