PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21389.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 271aa    MW: 30433.5 Da    PI: 6.6503
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21389.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.65.2e-55841881102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+fdflvdi+
  KHN21389.1  84 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDII 182
                 89******988889************************************************************************************* PP

       NF-YC  97 prdelk 102
                 prdelk
  KHN21389.1 183 PRDELK 188
                 ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-3463178IPR009072Histone-fold
PfamPF008082.4E-21106169IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-37107184IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDKSEQTQQQ QQQQQHVMGV AAGASQMAYS SHYPTAPMVA SGTPAVAVPS PTQAPAAFSS  60
SAHQLAYQQA QHFHHQQQQH QQQQLQMFWS NQMQEIEQTI DFKNHSLPLA RIKKIMKADE  120
DVRMISAEAP VIFAKACEMF ILELTLRSWI HTEENKRRTL QKNDIAAAIS RNDVFDFLVD  180
IIPRDELKEE GLGITKATIP LVGSPADMPY YYVPPQHPVV GPPGMIMGKP IGAEQATLYS  240
TQQPRPPVAF MPWPHTQPLQ QQPPQHQQTD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5792184395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983760.0BT098376.1 Soybean clone JCVI-FLGm-12K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349561.10.0nuclear factor Y transcription factor family protein
RefseqXP_028244073.10.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0B2QMH90.0A0A0B2QMH9_GLYSO; Nuclear transcription factor Y subunit C-9
STRINGGLYMA08G17630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-78nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]