PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G109300.1
Common NameB456_009G109300, LOC105771163
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 800aa    MW: 88286.3 Da    PI: 6.8246
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G109300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-096036401954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Gorai.009G109300.1 603 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 640
                         664459******************************87 PP
2BELL103.12e-33463532372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +e q+kkakL+ + eeV++rYk y++q+q+v+ssFe vaglg+a+pY+ lAlk+++r FrcL+ ai +qi
  Gorai.009G109300.1 463 HEYQQKKAKLVYMHEEVCRRYKLYHQQMQMVVSSFESVAGLGAATPYVPLALKTVARDFRCLRIAILDQI 532
                         799*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-47396530IPR006563POX domain
PfamPF075264.7E-41401528IPR006563POX domain
PROSITE profilePS5007112.212581644IPR001356Homeobox domain
SMARTSM003894.1E-8584648IPR001356Homeobox domain
CDDcd000861.01E-11584645No hitNo description
SuperFamilySSF466897.27E-17585651IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27587648IPR009057Homeodomain-like
PfamPF059203.7E-18601640IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MDMSKFRPES HVAQQRLRDK LRVQQSSKLV QQLEDFPNNL EDGCSSVHPA LNPGLVHVRN  60
VRNDNLLYDP DVFSSDIIHV SSNSSVLPSQ RDPILHQEMQ TAPENRQLLA EESSFPGMSQ  120
SNLSKFDASS KVSGDPHDCG NWRGVDSQHN CDWMVGYASG LAGSESNQDP RFVGEVISNN  180
ARILNSAYQD VQSTHPNPGS EIYCLERNLH FVSPSLYQNS LQDVVTTAQG LEVGSHEPQN  240
VREAARGSRI DYCGNEANPL HFGNTGTWMN TPLGEQSQQL GAELGFLASK SSVELGAAAS  300
DATTHGLSLS LSSHPTPKIC GADPVQFTGS QYYSDGFHSK PGEFKELRDS KTSNLGHFFS  360
MQKSSSTSKA DGKSLQDAGG TSAYVHRQTI PLGPFTGYAT ILKNSRFLKP AQELLDEFCH  420
LSNSKPVKVC DTSEGNPGEV SACKESNSGV SATFYSSNES CKHEYQQKKA KLVYMHEEVC  480
RRYKLYHQQM QMVVSSFESV AGLGAATPYV PLALKTVARD FRCLRIAILD QIKHVSRALG  540
EDLLSPTTGT SGSKGDINMS RLKCFGQKSG GVNMGFLEPQ QHSWRPQRGL PERSVAILRA  600
WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLESKCLAEG  660
NQNLSKSEGK STSEGRISCP NDGQSINRSC VNALSDKQLA CADMLVADAH DLEHWNHEKR  720
SSMDFHIPTS MEGSLMGFAP YQQSRLENGG LGAVSLTLGL MHGVESAQQQ QRQQQQQYQQ  780
QEHHSRRQFG GHLIHDFAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15590648563Homeobox protein Meis2
4xrm_B1e-15590648563Homeobox protein Meis2
4xrs_A1e-15590647158Homeobox protein Meis1
4xrs_B1e-15590647158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645391e-117JX964539.1 Gossypium hirsutum clone NBRI_TRANS-808 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448028.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012448029.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_012448030.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A0D2RYE10.0A0A0D2RYE1_GOSRA; Uncharacterized protein
STRINGGorai.009G109300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.19e-89BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]