PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G250300.1
Common NameB456_008G250300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 300aa    MW: 33782.8 Da    PI: 5.248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G250300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30131188258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+v++itY+ eHnh
  Gorai.008G250300.1 131 SDIWSWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRVFIITYTAEHNH 188
                         69*************************998**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30116191IPR003657WRKY domain
PROSITE profilePS5081133.729125191IPR003657WRKY domain
SuperFamilySSF1182904.58E-26126191IPR003657WRKY domain
SMARTSM007748.9E-35130190IPR003657WRKY domain
PfamPF031061.6E-25132188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEHWDCQAVT GETCSNNDAF ISYMENPEFS FGPLSFQHGD EDHLMSFPEV FEPNPNVLDG  60
LMEELYKPFC PELNPYTIPV LEDHVEEPEC QKQQPLVVSG TNKDSTKPKR SRKKQQHRVV  120
KHVTADDGLQ SDIWSWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER SCSDPRVFII  180
TYTAEHNHGH PSRRNSLAGS TRNKSSTVAK PKNLADKNEP HEVAESTVLS PAVIKDESVK  240
QESITMEGGK ILTPDIMLSD ELVESFEGFG DLFVDQFPDL SHELWFMNES ATLTGGLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18118191274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697900.0KF669790.1 Gossypium hirsutum WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435751.10.0PREDICTED: WRKY transcription factor 22-like isoform X2
TrEMBLA0A0D2TCD80.0A0A0D2TCD8_GOSRA; Uncharacterized protein
STRINGGorai.008G250300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-44WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]